| Element | Missed Instructions | Cov. | Missed Branches | Cov. | Missed | Cxty | Missed | Lines | Missed | Methods | Missed | Classes |
| Total | 2,878 of 3,779 | 23% | 310 of 381 | 18% | 325 | 406 | 629 | 785 | 167 | 215 | 15 | 18 |
| AtlasManager.java | | 0% | | 0% | 115 | 115 | 208 | 208 | 47 | 47 | 4 | 4 |
| AbstractDetections.java | | 0% | | 0% | 96 | 96 | 169 | 169 | 49 | 49 | 3 | 3 |
| BraiAnExtension.java | | 0% | | 0% | 25 | 25 | 63 | 63 | 14 | 14 | 1 | 1 |
| OverlappingDetections.java | | 0% | | 0% | 19 | 19 | 51 | 51 | 14 | 14 | 1 | 1 |
| ImageChannelTools.java | | 0% | | 0% | 15 | 15 | 41 | 41 | 12 | 12 | 2 | 2 |
| ChannelDetections.java | | 0% | | 0% | 16 | 16 | 37 | 37 | 11 | 11 | 1 | 1 |
| ChannelHistogram.java | | 66% | | 50% | 21 | 44 | 33 | 82 | 12 | 27 | 0 | 1 |
| SingleClassifier.java | | 0% | | 0% | 9 | 9 | 21 | 21 | 4 | 4 | 1 | 1 |
| PartialClassifier.java | | 0% | | 0% | 3 | 3 | 2 | 2 | 2 | 2 | 1 | 1 |
| BoundingBoxHierarchy.java | | 97% | | 93% | 5 | 63 | 2 | 109 | 1 | 34 | 0 | 2 |
| NoCellContainersFoundException.java | 0% | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |